Improving the Performance of Shake-and-Bake

Russ Miller

Individual slides listed below:

  1. Title Slide
  2. SnB Update: 1996-1997
  3. Shake-and-Bake: Basics
  4. Base: Conventional Direct Methods
  5. Overlay: Shake-and-Bake
  6. The Minimal Function
  7. Flowchart for SnB
  8. Shake-and-Bake: Ovals Figure
  9. Recommended SnB Parameters: High Resolution Data
  10. Recommended SnB Parameters: 1.1-1.4 Data
  11. ToxII: SnB Histogram
  12. Tox II: Trace of SnB Solution
  13. Some SnB Applications
  14. Factors Determining Success Rate
  15. New Application I: An I4 Structure (248+ atoms)
  16. Extending Resolution: the I4 Structure
  17. New Application II: Triclinic Vancomycin (404+ atoms)
  18. New Application III: Lysozyme (1001+ atoms)
  19. SnB v2.0: Rationale
  20. Protein Test Data
  21. Parameter Optimization: Peaks
  22. Parameter Optimization: Cycles
  23. Parameter Optimization: Phase Refinement Method
  24. Parameter Optimization: Triplets
  25. SnB v2.0: Timings (SGI R10000 Workstation)
  26. Related Presentations




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Russ Miller (miller@cs.buffalo.edu)