Publications

@Article{Schoeneman2020,
    author = {Schoeneman, F. and Chandola, V. and Napp, N. and Wodo, O. and Zola, J.},
    title = {Learning Manifolds from Dynamic Process Data},
    journal = {MDPI Algorithms},
    volume = {13},
    number = {30},
    year = {2020},
    doi = {10.3390/a13020030}
}

@InProceedings{Zheng2020,
    author = {Zheng, V. and Sariyuce, A.E. and Zola, J.},
    title = {Identifying Taxonomic Units in Metagenomic DNA Streams},
    booktitle = {International Workshop on Data Mining in Bioinformatics (BIOKDD)},
    year = {2020},
    doi = {10.1101/2020.08.21.261313}
}

@InProceedings{Javanmard2020,
    author = {Javanmard, M.M., and Ahmad, Z. and Zola, J. and Pouchet, L.-N., Chowdhury, R. and Harrison, R.},
    title = {Efficient Execution of Dynamic Programming Algorithms on Apache Spark},
    booktitle = {IEEE Cluster},
    year = {2020},
    doi = {10.1109/CLUSTER49012.2020.00044}
}

@InProceedings{Schoeneman2019,
    author = {Schoeneman, F. and Zola, J.},
    title = {Solving All-Pairs Shortest-Paths Problem in Large Graphs Using Apache Spark},
    booktitle = {International Conference on Parallel Processing (ICPP)},
    year = {2019},
    doi = {10.1145/3337821.3337852},
    archivePrefix = {arXiv},
    eprint = {1902.04446},
    primaryClass = {cs.DC}
}

@InProceedings{Ko2018,
  author = {Ko, S. and Sassoubre, L. and Zola, J.},
  title = {Applications and Challenges of Real-time Mobile DNA Analysis},
  booktitle = {International Workshop on Mobile Computing Systems and Applications (HotMobile)},
  pages = {1-6},
  year = {2018},
  doi = {10.1145/3177102.3177114},
  archivePrefix = {arXiv},
  eprint = {1711.07370},
  primaryClass = {cs-CE}
}

@InProceedings{Schoeneman2018a,
    author = {Schoeneman, F. and Chandola, V. and Napp, N. and Wodo, O. and Zola, J.},
    title = {Entropy-Isomap: Manifold Learning for High-dimensional Dynamic Processes},
    booktitle = {IEEE International Conference on Big Data (IEEE BigData)},
    pages = {1655–1660},
    year = {2018},
    doi = {10.1109/BigData.2018.8622454},
    archivePrefix = {arXiv},
    eprint = {1802.06823},
    primaryClass = {stat-ML}
}

@InProceedings{Karan2018,
    author = {Karan, S. and Eichhorn, M. and Hurlburt, B. and Iraci, G. and Zola, J.},
    title = {Fast Counting in Machine Learning Applications},
    booktitle = {Uncertainty in Artificial Intelligence (UAI)},
    year = {2018},
    archivePrefix = {arXiv},
    eprint = {1804.04640},
    primaryClass = {stat-ML}
}

@Article{Blanton2018,
    author = {Blanton, M. and Kang, A.R. and Karan, S. and Zola, J.},
    title = {Privacy Preserving Analytics on Distributed Medical Data},
    year = {2018},
    archivePrefix = {arXiv},
    eprint = {1806.06477},
    primaryClass = {cs-CR}
}

@InProceedings{Schoeneman2018b,
    author = {Schoeneman, F. and Zola, J.},
    title = {Scalable Manifold Learning for Big Data with Apache Spark},
    booktitle = {IEEE International Conference on Big Data (IEEE BigData)},
    pages = {272-281},
    year = {2018},
    doi = {10.1109/BigData.2018.8622617},
    archivePrefix = {arXiv},
    eprint = {1802.06823},
    primaryClass = {cs.DC, cs.LG}
}

@Article{Du2018,
  author = {Du, P. and Zebrowski, A. and Zola, J. and Ganapathysubramanian, B. and Wodo, O.},
  title = {Microstructure Design Using Graphs},
  journal = {Nature Computational Materials},
  volume = {4},
  number = {50}, 
  year = {2018},
  doi = {10.1038/s41524-018-0108-5}
}

@InProceedings{Schoeneman2017,
    author = {Schoeneman, F. and Mahapatra, S. and Chandola, V. and Napp, N. and Zola, J.},
    title = {Error Metrics for Learning Reliable Manifolds from Streaming Data},
    booktitle = {SIAM International Conference on Data Mining (SDM)},
    pages = {750-758},
    year = {2017},
    doi = {10.1137/1.9781611974973.84},
    archivePrefix = {arXiv},
    eprint = {1611.04067},
    primaryClass = {stat-ML}
}

@InProceedings{Karan2017,
  author = {Karan, S. and Zola, J.},
  title = {Scalable Exact Parent Sets Identification in Bayesian Networks Learning with Apache Spark},
  booktitle = {IEEE International Conference on High Performance Computing, Data, and Analytics (HiPC)},
  pages = {33-41},
  year = {2017},
  doi = {10.1109/HiPC.2017.00014},
  archivePrefix = {arXiv},
  eprint = {1705.06390},
  primaryClass = {cs-AI}
}

@InProceedings{Karan2016,
  author = {Karan, S. and Zola, J.},
  title = {Exact Structure Learning of Bayesian Networks by Optimal Path Extension},
  booktitle = {IEEE International Conference on Big Data (IEEE BigData)},
  pages = {48-55},
  year = {2016},
  doi = {10.1109/BigData.2016.7840588},
  archivePrefix = {arXiv},
  eprint = {1608.02682},
  primaryClass = {cs-AI}
}

@Article{Samudrala2015,
  author = {Samudrala, S.K. and Zola, J. and Aluru, S. and Ganapathysubramanian, B.},
  title = {Parallel Framework for Dimensionality Reduction of Large-Scale Datasets},
  journal = {Scientific Programming},
  year = {2015},
  doi = {10.1155/2015/180214}
}

@Article{Wodo2015,
  author = {Wodo, O. and Zola, J. and  Pokuri, B.S.S. and Du, P. and Ganapathysubramanian, B.},
  title = {Automated, High Throughput Exploration of Process-structure-property Relationships Using the MapReduce Paradigm},
  journal = {Materials Discovery},
  volume = {1},
  pages = {21-28},
  year = {2015},
  doi = {10.1016/j.md.2015.12.001}
}