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smarten [2020/03/06 10:17] Jaroslaw Zola |
smarten [2020/03/06 10:24] Jaroslaw Zola |
''echo "deb http://mirror.oxfordnanoportal.com/apt xenial-stable-minit non-free" > /etc/apt/sources.list.d/nanoporetech.list'' | ''echo "deb http://mirror.oxfordnanoportal.com/apt xenial-stable-minit non-free" > /etc/apt/sources.list.d/nanoporetech.list'' |
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''apt update && apt install minknow-core-minit-offline ont-bream4-minit ont-configuration-customer-minit ont-minknow-frontend-minit ont-minknow-static-frontend | ''apt update && apt upgrade'' |
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| ''apt install minknow-core-minit-offline ont-bream4-minit ont-configuration-customer-minit ont-minknow-frontend-minit ont-minknow-static-frontend'' |
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| The only caveat is that currently, it is not possible to install ''guppy'' basecaller directly from packages (there are several reasons: first, dependencies that cannot be satisfied without downgrading Ubuntu, second, lack of support for NVIDIA SM53 in the default package). However, we were able to easily bypass these problems by compiling (with bit of editing) ''guppy'' from sources (we will share the process soon). Below is a glimpse at MinKNOW running on NVIDIA Nano. |
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| {{ ::2020-03-06_09.52.53-1.jpg?200 |}} |
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